OBO Foundry dashboard analysis¶

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/tmp/ipykernel_3243/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle            19
RDF/XML Syntax    16
unknown            6
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 35 4917.809524 19164.586270 0.0 76.00 387.0 2379.25 124680.0
Declaration 35 1034.714286 3507.483090 0.0 23.00 112.0 818.25 22818.0
SubClassOf 33 1150.476190 3809.177392 0.0 6.75 64.0 882.00 24611.0
ObjectPropertyRange 31 26.833333 32.541093 0.0 1.00 21.5 30.00 144.0
ObjectPropertyDomain 31 24.452381 30.716804 0.0 0.25 21.5 26.00 133.0
DataPropertyRange 29 11.261905 20.526080 0.0 0.00 2.5 10.75 97.0
InverseObjectProperties 25 10.928571 27.265088 0.0 0.00 1.5 8.00 126.0
SubObjectPropertyOf 25 35.190476 54.430640 0.0 0.00 9.5 49.50 214.0
DisjointClasses 24 302.952381 1892.903589 0.0 0.00 1.0 6.75 12277.0
DataPropertyDomain 24 10.738095 36.722466 0.0 0.00 2.0 4.75 235.0
ClassAssertion 24 145.833333 431.717044 0.0 0.00 1.0 20.00 1952.0
EquivalentClasses 21 52.666667 101.452059 0.0 0.00 0.5 61.75 395.0
TransitiveObjectProperty 19 3.023810 4.419955 0.0 0.00 0.0 5.00 15.0
SubDataPropertyOf 15 5.142857 11.993029 0.0 0.00 0.0 2.75 63.0
FunctionalDataProperty 15 1.190476 1.990687 0.0 0.00 0.0 2.00 8.0
SubAnnotationPropertyOf 15 10.214286 35.454220 0.0 0.00 0.0 7.75 228.0
FunctionalObjectProperty 15 2.142857 3.619537 0.0 0.00 0.0 2.75 11.0
InverseFunctionalObjectProperty 13 1.595238 3.231397 0.0 0.00 0.0 1.00 12.0
SymmetricObjectProperty 12 2.666667 4.750695 0.0 0.00 0.0 4.25 16.0
AnnotationPropertyRangeOf 11 6.261905 21.210972 0.0 0.00 0.0 0.75 134.0
IrrefexiveObjectProperty 10 2.880952 6.153335 0.0 0.00 0.0 0.00 22.0
ObjectPropertyAssertion 10 338.357143 1603.093227 0.0 0.00 0.0 0.00 10226.0
AsymmetricObjectProperty 8 2.238095 5.040371 0.0 0.00 0.0 0.00 16.0
DisjointUnion 7 6.071429 19.651094 0.0 0.00 0.0 0.00 116.0
DataPropertyAssertion 7 146.642857 584.884555 0.0 0.00 0.0 0.00 3617.0
EquivalentObjectProperties 6 1.523810 5.781544 0.0 0.00 0.0 0.00 36.0
SubPropertyChainOf 5 0.880952 2.898295 0.0 0.00 0.0 0.00 13.0
ReflexiveObjectProperty 5 0.119048 0.327770 0.0 0.00 0.0 0.00 1.0
AnnotationPropertyDomain 4 0.238095 0.983015 0.0 0.00 0.0 0.00 6.0
DisjointObjectProperties 3 0.428571 1.610073 0.0 0.00 0.0 0.00 8.0
DifferentIndividuals 3 0.142857 0.521322 0.0 0.00 0.0 0.00 2.0
Rule 2 0.285714 1.366600 0.0 0.00 0.0 0.00 8.0
EquivalentDataProperties 2 0.214286 0.976198 0.0 0.00 0.0 0.00 5.0
DatatypeDefinition 2 0.476190 2.932061 0.0 0.00 0.0 0.00 19.0
SameIndividual 1 0.404762 2.623157 0.0 0.00 0.0 0.00 17.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 36 4155.833333 11892.871972 0.0 80.5 397.0 2663.00 70987.0
ObjectUnionOf 25 13.000000 21.161401 0.0 0.0 4.0 13.00 88.0
ObjectAllValuesFrom 23 31.261905 68.717541 0.0 0.0 4.0 39.50 400.0
ObjectIntersectionOf 20 28.976190 92.948055 0.0 0.0 0.0 16.75 470.0
ObjectSomeValuesFrom 20 99.023810 248.162957 0.0 0.0 0.0 88.25 1478.0
ObjectExactCardinality 18 8.095238 24.810314 0.0 0.0 0.0 3.75 115.0
DataExactCardinality 16 2.285714 3.896751 0.0 0.0 0.0 3.00 14.0
DataAllValuesFrom 12 1.023810 2.005944 0.0 0.0 0.0 1.00 8.0
DataHasValue 12 34.023810 86.208903 0.0 0.0 0.0 6.75 494.0
ObjectComplementOf 9 1.357143 3.753512 0.0 0.0 0.0 0.00 22.0
ObjectOneOf 8 17.619048 63.270211 0.0 0.0 0.0 0.00 272.0
ObjectHasValue 8 7.523810 34.212562 0.0 0.0 0.0 0.00 189.0
DataSomeValuesFrom 7 0.619048 1.413392 0.0 0.0 0.0 0.00 4.0
ObjectMinCardinality 7 0.833333 2.517419 0.0 0.0 0.0 0.00 11.0
ObjectMaxCardinality 5 22.238095 137.881853 0.0 0.0 0.0 0.00 894.0
DataMinCardinality 3 0.380952 2.163470 0.0 0.0 0.0 0.00 14.0
DataMaxCardinality 3 1.904762 9.704938 0.0 0.0 0.0 0.00 61.0

OBO Score (Experimental)

ontology score score_dash score_impact
24 OBO 0.321 0.571 0.071
15 IAO 0.300 0.600 0.000
13 FOAF 0.285 0.333 0.238
18 MDO 0.285 0.571 0.000
38 enanomapper 0.285 0.571 0.000
28 PROVO 0.276 0.504 0.048
4 CHAMEO 0.275 0.549 0.000
11 EMMO_crystallography 0.275 0.549 0.000
29 QUDT 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
9 EMMO_BattINFO 0.275 0.549 0.000
10 EMMO_atomistic 0.252 0.504 0.000
31 SEMMD 0.252 0.504 0.000
12 EMMO_mappings 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
30 SAREF 0.241 0.482 0.000
26 OM 0.234 0.467 0.000
36 UO 0.234 0.467 0.000
34 SP 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
17 MAMBO 0.234 0.467 0.000
33 SO 0.234 0.467 0.000
22 NPO 0.234 0.467 0.000
23 OA 0.222 0.444 0.000
14 GPO 0.222 0.444 0.000
20 MatOnto 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
39 mvc 0.222 0.444 0.000
21 MaterialsMine 0.222 0.444 0.000
27 PMD 0.222 0.444 0.000
19 MSEO 0.222 0.444 0.000
40 periodictable 0.200 0.400 0.000
37 WILD 0.200 0.400 0.000
32 SKOS_MDO 0.200 0.400 0.000
35 SSN 0.189 0.378 0.000
41 ssos 0.155 0.311 0.000
16 LPBFO 0.000 0.000 0.000
25 OEO 0.000 0.000 0.000
5 CIF 0.000 0.000 0.000
2 BWMD-MID 0.000 0.000 0.000
1 BWMD-DOMAIN 0.000 0.000 0.000
0 AMONTOLOGY 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 42.0 0.207952 0.091621 0.0 0.2055 0.234 0.26925 0.321
score_dash 42.0 0.407214 0.179236 0.0 0.4000 0.467 0.50400 0.600
score_impact 42.0 0.008500 0.038558 0.0 0.0000 0.000 0.00000 0.238

OBO dependency graph